Species lists for collection sites — collections • flyer

Species lists for collections sites from Brusco 2020 ('the manuscipt')

Usage

collections

Format

an sf tibble with one row per collection

scientific_name: Name of the collection per the manuscript
type_specimen: Marked as a type based on the manuscript
synonyms: Synonym names mentioned in the manuscript
other_notes: notes on the collection from the manuscript
questionable_id: notes from the manuscript on identification status
site: Collection site name per the manuscript
gbif_usage_key: GBIF usage key for integration with GBIF
gbif_scientific_name: GBIF used scientific name for the collection
gbif_match_type: How the 'scientific_name' was resolved with GBIF
gbif_status: Whether GBIF recognizes a particular name applied to the collection
gbif_url: Hyperlink to the GBIF page for the resolved entry.
collection_site: Collection site name per the manuscript
location_english: flyer package name for the site from 'places'

Examples

data(collections)
head(collections)
#> # A tibble: 6 × 13
#>   type_specimen synonyms repository other_notes  questionable_id scientific_name
#>   <chr>         <chr>    <chr>      <chr>        <chr>           <chr>          
#> 1 NA            NA       NA         Hawksbill t… FALSE           Eretmochelys i…
#> 2 NA            NA       NA         symbiotic h… FALSE           Obelia dichoto…
#> 3 NA            NA       NA         pelagic cra… FALSE           Planes minutus 
#> 4 NA            NA       NA         the pelagic… FALSE           Pleuroncodes p…
#> 5 NA            NA       NA         the most co… FALSE           Geodia mesotri…
#> 6 NA            NA       NA         one of the … FALSE           Aglaophenia di…
#> # ℹ 7 more variables: gbif_usage_key <chr>, gbif_scientific_name <chr>,
#> #   gbif_match_type <chr>, gbif_status <chr>, gbif_url <chr>,
#> #   collection_site <chr>, location_english <chr>

## if you want to make it spatial
data(places)
collections_sf <- dplyr::left_join(
     collections, 
     dplyr::select(places, location_english, geometry),
     by = 'location_english'
) |>
  sf::st_as_sf()