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Create a directory and write out all empirical stz data

Source: R/dirmakR.R
dirmakR.Rd

Create a directory following standard conventions to ensure appropriate placement of subdirectories and naming conventions.

Usage

dirmakR(outpath, sci_name, x, nrcs_code, regioncode, overwrite, estz_type)

Arguments

outpath

the directory folder where the final products will be placed. Note there is no need to create an independent folder to hold them, this will be included in the product.

sci_name

the scientific name of the taxon

x

Vector data product.

nrcs_code

from https://plants.usda.gov/

regioncode

a character vector string of the name for this or, the output from regioncoding

overwrite

whether to overwrite the existing directory (if it already exists)

estz_type

one of 'lg' for landscape genetics (or genetic), 'cg' for common garden, or 'cm' for climate matched. If multiple approaches choose the most robust method, e.g. 'cg' > 'lg' > 'cm'

Examples

if (FALSE) { # \dontrun{
acth7 <- sf::st_read(file.path(
  system.file(package="eSTZwritR"), "extdata", 'ACTH7.gpkg')
)
dirmakR('.',
  'Eriocoma thurberiana',
   acth7,
   nrcs_code = 'ACHT7',
   regioncode =  'CGB-CPN',
   estz_type = 'cg'
   )
} # }